Index

A

add_local() (soupy.modeling.augmentedVector.AugmentedVector method) adj_rhs() (soupy.modeling.controlQoI.L2MisfitControlQoI method) (soupy.modeling.controlQoI.VariationalControlQoI method) allgather_vector_as_numpy() (in module soupy.collectives.mpiUtils) allocate_process_sample_sizes() (in module soupy.collectives.mpiUtils) allReduce() (soupy.collectives.collective.MultipleSamePartitioningPDEsCollective method) (soupy.collectives.collective.NullCollective method) apply() (soupy.modeling.augmentedVector.AugmentedVector method) apply_BC() (in module soupy.solver.newtonBacktrackSolver) apply_ij() (soupy.modeling.controlModel.ControlModel method) (soupy.modeling.controlQoI.ControlQoI method) (soupy.modeling.controlQoI.L2MisfitControlQoI method) (soupy.modeling.controlQoI.VariationalControlQoI method) (soupy.modeling.PDEControlProblem.PDEVariationalControlProblem method) apply_ijk() (soupy.modeling.controlQoI.L2MisfitControlQoI method) (soupy.modeling.controlQoI.VariationalControlQoI method) (soupy.modeling.PDEControlProblem.PDEVariationalControlProblem method)

applyC() (soupy.modeling.controlModel.ControlModel method) applyCt() (soupy.modeling.controlModel.ControlModel method) applyCz() (soupy.modeling.controlModel.ControlModel method) applyCzt() (soupy.modeling.controlModel.ControlModel method) applyWmm() (soupy.modeling.controlModel.ControlModel method) applyWmu() (soupy.modeling.controlModel.ControlModel method) applyWum() (soupy.modeling.controlModel.ControlModel method) applyWuu() (soupy.modeling.controlModel.ControlModel method) applyWuz() (soupy.modeling.controlModel.ControlModel method) applyWzu() (soupy.modeling.controlModel.ControlModel method) applyWzz() (soupy.modeling.controlModel.ControlModel method) AugmentedVector (class in soupy.modeling.augmentedVector) axpy() (soupy.modeling.augmentedVector.AugmentedVector method)

B

bcast() (soupy.collectives.collective.MultipleSamePartitioningPDEsCollective method) (soupy.collectives.collective.NullCollective method) BFGS (class in soupy.optimization.bfgs)

BFGS_operator (class in soupy.optimization.bfgs) BFGS_ParameterList() (in module soupy.optimization.bfgs) BFGSoperator_ParameterList() (in module soupy.optimization.bfgs)

C

CGSolverSteihaug (class in soupy.optimization.cgSolverSteihaug) CGSolverSteihaug_ParameterList() (in module soupy.optimization.cgSolverSteihaug) computeComponents() (soupy.modeling.controlCostFunctional.DeterministicControlCostFunctional method) (soupy.modeling.meanVarRiskMeasureSAA.MeanVarRiskMeasureSAA method) (soupy.modeling.meanVarRiskMeasureStochastic.MeanVarRiskMeasureStochastic method) (soupy.modeling.riskMeasure.RiskMeasure method) (soupy.modeling.superquantileRiskMeasureSAA.SuperquantileRiskMeasureSAA method) (soupy.modeling.transformedMeanRiskMeasureSAA.TransformedMeanRiskMeasureSAA method) ControlCostFunctional (class in soupy.modeling.controlCostFunctional) ControlCostHessian (class in soupy.modeling.controlCostHessian) ControlModel (class in soupy.modeling.controlModel) ControlModelHessian (class in soupy.modeling.controlModelHessian) ControlQoI (class in soupy.modeling.controlQoI) copy() (soupy.modeling.augmentedVector.AugmentedVector method) cost() (soupy.modeling.controlCostFunctional.ControlCostFunctional method) (soupy.modeling.controlCostFunctional.DeterministicControlCostFunctional method) (soupy.modeling.controlCostFunctional.PenalizationControlCostFunctional method) (soupy.modeling.controlCostFunctional.RiskMeasureControlCostFunctional method) (soupy.modeling.controlModel.ControlModel method) (soupy.modeling.controlQoI.ControlQoI method) (soupy.modeling.controlQoI.L2MisfitControlQoI method) (soupy.modeling.controlQoI.VariationalControlQoI method) (soupy.modeling.meanVarRiskMeasureSAA.MeanVarRiskMeasureSAA method) (soupy.modeling.meanVarRiskMeasureStochastic.MeanVarRiskMeasureStochastic method) (soupy.modeling.penalization.L2Penalization method) (soupy.modeling.penalization.MultiPenalization method) (soupy.modeling.penalization.Penalization method) (soupy.modeling.penalization.VariationalPenalization method) (soupy.modeling.penalization.WeightedL2Penalization method) (soupy.modeling.riskMeasure.RiskMeasure method) (soupy.modeling.superquantileRiskMeasureSAA.SuperquantileRiskMeasureSAA method) (soupy.modeling.transformedMeanRiskMeasureSAA.TransformedMeanRiskMeasureSAA method) (soupy.optimization.projectableConstraint.InnerProductEqualityConstraint method) (soupy.optimization.projectableConstraint.ProjectableConstraint method) (soupy.utils.scipyCostWrapper.ScipyCostWrapper method)

D

DeterministicControlCostFunctional (class in soupy.modeling.controlCostFunctional)

E

evalGradientControl() (soupy.modeling.controlModel.ControlModel method) (soupy.modeling.PDEControlProblem.PDEVariationalControlProblem method)

evalGradientParameter() (soupy.modeling.controlModel.ControlModel method) (soupy.modeling.PDEControlProblem.PDEVariationalControlProblem method)

F

function() (soupy.utils.scipyCostWrapper.ScipyCostWrapper method)

FunctionWrapper (class in soupy.modeling.transformedMeanRiskMeasureSAA)

G

gather_samples() (soupy.modeling.meanVarRiskMeasureSAA.MeanVarRiskMeasureSAA method) (soupy.modeling.superquantileRiskMeasureSAA.SuperquantileRiskMeasureSAA method) (soupy.modeling.transformedMeanRiskMeasureSAA.TransformedMeanRiskMeasureSAA method) generate_control() (soupy.modeling.PDEControlProblem.PDEVariationalControlProblem method) generate_parameter() (soupy.modeling.PDEControlProblem.PDEVariationalControlProblem method) generate_state() (soupy.modeling.PDEControlProblem.PDEVariationalControlProblem method) generate_vector() (soupy.modeling.controlCostFunctional.ControlCostFunctional method) (soupy.modeling.controlCostFunctional.DeterministicControlCostFunctional method) (soupy.modeling.controlCostFunctional.PenalizationControlCostFunctional method) (soupy.modeling.controlCostFunctional.RiskMeasureControlCostFunctional method) (soupy.modeling.controlModel.ControlModel method) (soupy.modeling.meanVarRiskMeasureSAA.MeanVarRiskMeasureSAA method) (soupy.modeling.meanVarRiskMeasureStochastic.MeanVarRiskMeasureStochastic method) (soupy.modeling.riskMeasure.RiskMeasure method) (soupy.modeling.superquantileRiskMeasureSAA.SuperquantileRiskMeasureSAA method) (soupy.modeling.transformedMeanRiskMeasureSAA.TransformedMeanRiskMeasureSAA method) get_global() (in module soupy.collectives.mpiUtils) get_local() (soupy.modeling.augmentedVector.AugmentedVector method) get_scalar() (soupy.modeling.augmentedVector.AugmentedVector method) get_vector() (soupy.modeling.augmentedVector.AugmentedVector method)

grad() (soupy.modeling.controlCostFunctional.ControlCostFunctional method) (soupy.modeling.controlCostFunctional.DeterministicControlCostFunctional method) (soupy.modeling.controlCostFunctional.PenalizationControlCostFunctional method) (soupy.modeling.controlCostFunctional.RiskMeasureControlCostFunctional method) (soupy.modeling.controlQoI.ControlQoI method) (soupy.modeling.controlQoI.L2MisfitControlQoI method) (soupy.modeling.controlQoI.VariationalControlQoI method) (soupy.modeling.meanVarRiskMeasureSAA.MeanVarRiskMeasureSAA method) (soupy.modeling.meanVarRiskMeasureStochastic.MeanVarRiskMeasureStochastic method) (soupy.modeling.penalization.L2Penalization method) (soupy.modeling.penalization.MultiPenalization method) (soupy.modeling.penalization.Penalization method) (soupy.modeling.penalization.VariationalPenalization method) (soupy.modeling.penalization.WeightedL2Penalization method) (soupy.modeling.riskMeasure.RiskMeasure method) (soupy.modeling.superquantileRiskMeasureSAA.SuperquantileRiskMeasureSAA method) (soupy.modeling.transformedMeanRiskMeasureSAA.FunctionWrapper method) (soupy.modeling.transformedMeanRiskMeasureSAA.IdentityFunction method) (soupy.modeling.transformedMeanRiskMeasureSAA.TransformedMeanRiskMeasureSAA method) (soupy.utils.scipyCostWrapper.ScipyCostWrapper method)

H

hessian() (soupy.modeling.controlCostFunctional.ControlCostFunctional method) (soupy.modeling.controlCostFunctional.DeterministicControlCostFunctional method) (soupy.modeling.controlCostFunctional.PenalizationControlCostFunctional method) (soupy.modeling.controlCostFunctional.RiskMeasureControlCostFunctional method) (soupy.modeling.meanVarRiskMeasureSAA.MeanVarRiskMeasureSAA method) (soupy.modeling.meanVarRiskMeasureStochastic.MeanVarRiskMeasureStochastic method) (soupy.modeling.penalization.L2Penalization method) (soupy.modeling.penalization.MultiPenalization method) (soupy.modeling.penalization.Penalization method) (soupy.modeling.penalization.VariationalPenalization method) (soupy.modeling.penalization.WeightedL2Penalization method) (soupy.modeling.riskMeasure.RiskMeasure method) (soupy.modeling.superquantileRiskMeasureSAA.SuperquantileRiskMeasureSAA method) (soupy.modeling.transformedMeanRiskMeasureSAA.FunctionWrapper method) (soupy.modeling.transformedMeanRiskMeasureSAA.IdentityFunction method) (soupy.modeling.transformedMeanRiskMeasureSAA.TransformedMeanRiskMeasureSAA method) (soupy.utils.scipyCostWrapper.ScipyCostWrapper method)

hessp() (soupy.utils.scipyCostWrapper.ScipyCostWrapper method) homogenize_BC() (in module soupy.solver.newtonBacktrackSolver)

I

IdentityFunction (class in soupy.modeling.transformedMeanRiskMeasureSAA) IdentityOperator (class in soupy.optimization.cgSolverSteihaug) InexactNewtonCG (class in soupy.optimization.inexactNewtonCG) InexactNewtonCG_ParameterList() (in module soupy.optimization.inexactNewtonCG) init_control() (soupy.modeling.controlModel.ControlModel method) (soupy.modeling.PDEControlProblem.PDEVariationalControlProblem method) init_parameter() (soupy.modeling.controlModel.ControlModel method) (soupy.modeling.PDEControlProblem.PDEVariationalControlProblem method) init_vector() (soupy.modeling.controlModelHessian.ControlModelHessian method) (soupy.modeling.penalization.L2Penalization method) (soupy.modeling.penalization.MultiPenalization method) (soupy.modeling.penalization.Penalization method) (soupy.modeling.penalization.VariationalPenalization method) (soupy.modeling.penalization.WeightedL2Penalization method) (soupy.optimization.bfgs.RescaledIdentity method)

inner() (soupy.modeling.augmentedVector.AugmentedVector method) (soupy.modeling.controlCostHessian.ControlCostHessian method) InnerProductEqualityConstraint (class in soupy.optimization.projectableConstraint)

J

jac() (soupy.utils.scipyCostWrapper.ScipyCostWrapper method)

L

L2MisfitControlQoI (class in soupy.modeling.controlQoI) L2MisfitVarfHandler (class in soupy.modeling.controlQoI)

L2Penalization (class in soupy.modeling.penalization) LS_ParameterList() (in module soupy.optimization.inexactNewtonCG)

M

MeanVarRiskMeasureSAA (class in soupy.modeling.meanVarRiskMeasureSAA) meanVarRiskMeasureSAASettings() (in module soupy.modeling.meanVarRiskMeasureSAA) MeanVarRiskMeasureStochastic (class in soupy.modeling.meanVarRiskMeasureStochastic) meanVarRiskMeasureStochasticSettings() (in module soupy.modeling.meanVarRiskMeasureStochastic) module soupy soupy.collectives.collective soupy.collectives.mpiUtils soupy.modeling.augmentedVector soupy.modeling.controlCostFunctional soupy.modeling.controlCostHessian soupy.modeling.controlModel soupy.modeling.controlModelHessian soupy.modeling.controlQoI soupy.modeling.meanVarRiskMeasureSAA soupy.modeling.meanVarRiskMeasureStochastic soupy.modeling.PDEControlProblem soupy.modeling.penalization soupy.modeling.riskMeasure soupy.modeling.superquantileRiskMeasureSAA soupy.modeling.transformedMeanRiskMeasureSAA soupy.modeling.variables soupy.optimization.bfgs soupy.optimization.cgSolverSteihaug soupy.optimization.inexactNewtonCG soupy.optimization.projectableConstraint soupy.optimization.sgd soupy.optimization.steepestDescent soupy.solver.newtonBacktrackSolver soupy.solver.nonlinearVariationalSolver soupy.solver.PETScLUSolver soupy.utils.penalizationFiniteDifference soupy.utils.qoiFiniteDifference soupy.utils.scipyCostWrapper soupy.utils.stochasticCostFiniteDifference

mult() (soupy.modeling.controlCostHessian.ControlCostHessian method) (soupy.modeling.controlModelHessian.ControlModelHessian method) (soupy.optimization.cgSolverSteihaug.IdentityOperator method) MultiPenalization (class in soupy.modeling.penalization) MultipleSamePartitioningPDEsCollective (class in soupy.collectives.collective) MultipleSerialPDEsCollective() (in module soupy.collectives.collective)

N

ncalls (soupy.modeling.controlCostHessian.ControlCostHessian property) NewtonBacktrackSolver (class in soupy.solver.newtonBacktrackSolver)

NonlinearVariationalSolver (class in soupy.solver.nonlinearVariationalSolver) NullCollective (class in soupy.collectives.collective)

O

objective() (soupy.modeling.controlCostFunctional.DeterministicControlCostFunctional method)

P

PDEVariationalControlProblem (class in soupy.modeling.PDEControlProblem) Penalization (class in soupy.modeling.penalization) PenalizationControlCostFunctional (class in soupy.modeling.controlCostFunctional) penalizationFiniteDifference() (in module soupy.utils.penalizationFiniteDifference)

PETScLUSolver (class in soupy.solver.PETScLUSolver) project() (soupy.optimization.projectableConstraint.InnerProductEqualityConstraint method) (soupy.optimization.projectableConstraint.ProjectableConstraint method) ProjectableConstraint (class in soupy.optimization.projectableConstraint)

Q

qoiFiniteDifference() (in module soupy.utils.qoiFiniteDifference)

R

rank() (soupy.collectives.collective.MultipleSamePartitioningPDEsCollective method) (soupy.collectives.collective.NullCollective method) reason (soupy.optimization.cgSolverSteihaug.CGSolverSteihaug attribute)

RescaledIdentity (class in soupy.optimization.bfgs) RiskMeasure (class in soupy.modeling.riskMeasure) RiskMeasureControlCostFunctional (class in soupy.modeling.controlCostFunctional)

S

SAACostFiniteDifference() (in module soupy.utils.stochasticCostFiniteDifference) sample_superquantile() (in module soupy.modeling.superquantileRiskMeasureSAA) sample_superquantile_by_minimization() (in module soupy.modeling.superquantileRiskMeasureSAA) ScipyCostWrapper (class in soupy.utils.scipyCostWrapper) set_H0inv() (soupy.optimization.bfgs.BFGS_operator method) set_local() (soupy.modeling.augmentedVector.AugmentedVector method) set_local_from_global() (in module soupy.collectives.mpiUtils) set_nonlinear_solver_parameters() (soupy.modeling.PDEControlProblem.PDEVariationalControlProblem method) set_operator() (soupy.optimization.cgSolverSteihaug.CGSolverSteihaug method) (soupy.solver.PETScLUSolver.PETScLUSolver method) set_preconditioner() (soupy.optimization.cgSolverSteihaug.CGSolverSteihaug method) set_scalar() (soupy.modeling.augmentedVector.AugmentedVector method) set_TR() (soupy.optimization.cgSolverSteihaug.CGSolverSteihaug method) set_vector() (soupy.modeling.augmentedVector.AugmentedVector method) setLinearizationPoint() (soupy.modeling.controlModel.ControlModel method) (soupy.modeling.controlQoI.ControlQoI method) (soupy.modeling.controlQoI.L2MisfitControlQoI method) (soupy.modeling.controlQoI.VariationalControlQoI method) (soupy.modeling.PDEControlProblem.PDEVariationalControlProblem method) SGD (class in soupy.optimization.sgd) SGD_ParameterList() (in module soupy.optimization.sgd) size() (soupy.collectives.collective.MultipleSamePartitioningPDEsCollective method) (soupy.collectives.collective.NullCollective method) solve() (soupy.optimization.bfgs.BFGS method) (soupy.optimization.bfgs.BFGS_operator method) (soupy.optimization.bfgs.RescaledIdentity method) (soupy.optimization.cgSolverSteihaug.CGSolverSteihaug method) (soupy.optimization.cgSolverSteihaug.IdentityOperator method) (soupy.optimization.inexactNewtonCG.InexactNewtonCG method) (soupy.optimization.sgd.SGD method) (soupy.optimization.steepestDescent.SteepestDescent method) (soupy.solver.newtonBacktrackSolver.NewtonBacktrackSolver method) (soupy.solver.nonlinearVariationalSolver.NonlinearVariationalSolver method) (soupy.solver.PETScLUSolver.PETScLUSolver method) solve_transpose() (soupy.solver.PETScLUSolver.PETScLUSolver method) solveAdj() (soupy.modeling.controlModel.ControlModel method) (soupy.modeling.PDEControlProblem.PDEVariationalControlProblem method) solveAdjIncremental() (soupy.modeling.controlModel.ControlModel method) solveFwd() (soupy.modeling.controlModel.ControlModel method) (soupy.modeling.PDEControlProblem.PDEVariationalControlProblem method) solveFwdIncremental() (soupy.modeling.controlModel.ControlModel method) solveIncremental() (soupy.modeling.PDEControlProblem.PDEVariationalControlProblem method) soupy module soupy.collectives.collective module soupy.collectives.mpiUtils module soupy.modeling.augmentedVector module soupy.modeling.controlCostFunctional module soupy.modeling.controlCostHessian module

soupy.modeling.controlModel module soupy.modeling.controlModelHessian module soupy.modeling.controlQoI module soupy.modeling.meanVarRiskMeasureSAA module soupy.modeling.meanVarRiskMeasureStochastic module soupy.modeling.PDEControlProblem module soupy.modeling.penalization module soupy.modeling.riskMeasure module soupy.modeling.superquantileRiskMeasureSAA module soupy.modeling.transformedMeanRiskMeasureSAA module soupy.modeling.variables module soupy.optimization.bfgs module soupy.optimization.cgSolverSteihaug module soupy.optimization.inexactNewtonCG module soupy.optimization.projectableConstraint module soupy.optimization.sgd module soupy.optimization.steepestDescent module soupy.solver.newtonBacktrackSolver module soupy.solver.nonlinearVariationalSolver module soupy.solver.PETScLUSolver module soupy.utils.penalizationFiniteDifference module soupy.utils.qoiFiniteDifference module soupy.utils.scipyCostWrapper module soupy.utils.stochasticCostFiniteDifference module SteepestDescent (class in soupy.optimization.steepestDescent) SteepestDescent_ParameterList() (in module soupy.optimization.steepestDescent) stochasticCostFiniteDifference() (in module soupy.utils.stochasticCostFiniteDifference) superquantile() (soupy.modeling.superquantileRiskMeasureSAA.SuperquantileRiskMeasureSAA method) SuperquantileRiskMeasureSAA (class in soupy.modeling.superquantileRiskMeasureSAA) superquantileRiskMeasureSAASettings() (in module soupy.modeling.superquantileRiskMeasureSAA)

T

termination_reasons (soupy.optimization.bfgs.BFGS attribute) (soupy.optimization.inexactNewtonCG.InexactNewtonCG attribute) (soupy.optimization.sgd.SGD attribute) (soupy.optimization.steepestDescent.SteepestDescent attribute) (soupy.solver.newtonBacktrackSolver.NewtonBacktrackSolver attribute)

TR_ParameterList() (in module soupy.optimization.inexactNewtonCG) TransformedMeanRiskMeasureSAA (class in soupy.modeling.transformedMeanRiskMeasureSAA) transformedMeanRiskMeasureSAASettings() (in module soupy.modeling.transformedMeanRiskMeasureSAA)

U

update() (soupy.optimization.bfgs.BFGS_operator method)

update_x_with_TR() (soupy.optimization.cgSolverSteihaug.CGSolverSteihaug method) update_x_without_TR() (soupy.optimization.cgSolverSteihaug.CGSolverSteihaug method)

V

VariationalControlQoI (class in soupy.modeling.controlQoI)

VariationalPenalization (class in soupy.modeling.penalization)

W

WeightedL2Penalization (class in soupy.modeling.penalization)

Z

zero() (soupy.modeling.augmentedVector.AugmentedVector method)